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Fix multitude of issues with plotPPA as well as issue related to Popen issuing too many synthesis

Eclipse Webmaster requested to merge github/fork/stineje/main into main

Created by: stineje

This fixes a multitude of issues related to plotPPA (+ some nasty bugs related to empty arrays). The Popen command is not used with Pool to avoid it checking out too many items and using up all the synthesis licenses.

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