Add patches for fossology bugs so that "fossy" command can operate correctly

• PHP memory limit should be increased on order to process large uploads
• beacause of this bug fossology job statuses are not reported correctly by fossology rest API, causing "fossy" command to hang and then fail when an upload's old job failed or has been killed in the past, because the result returned by API wrongly marks all jobs as failed or killed. The bug will be solved by a complete refactoring of job rest API in this PR, but in the meantime, we need to patch it while keeping the "old" rest API logic